tip labels and ASV names across a phylo, otu table, and tax table are not matching

I am using match.phylo.data() in picante to match an otu table, taxonomy table, and tree tip labels in R. I am able to save the output as a list with no errors or warnings (typically I get a warning for dropped tips if there are any) but when I use the output for diversity metrics, I only get warnings and errors that no tip names match.

library(picante)match.phylo.otu = match.phylo.data(tree, otu)PD <- pd(samp = match.phylo.otu$data,tree = match.phylo.otu$phy,              include.root = FALSE)

But after trying to calculate faith's PD, I get this output and a PD column as all 0's and nulls

    There were 50 or more warnings (use warnings() to see the first 50)...    50: In drop.tip.phylo(tree, treeabsent) :      drop all tips of the tree: returning NULL

I've manually re-created the tree twice, once using R sequinr and again using plain-old unix, both outputting the problem above. I can also manually copy and paste tip labels across datasets and find corresponding information.

Here I've generated subset of each dataset. (the fact I can subset by tip labels is contrary to the problem I'm having in match.phylo.data).

ex.otu <- otu[1:5,1:5]ex.tax <- tax[rownames(tax) %in% rownames(ex.otu),]library(castor)ex.tree <- get_subtree_with_tips(tree,only_tips = rownames(ex.otu))ex.tree <- ex.tree$subtree> dput(ex.otu)structure(list(NASQAN2015.147.348 = c(0L, 87L, 0L, 105L, 0L),     NASQAN2015.148.348 = c(0L, 57L, 0L, 23L, 21L), NASQAN2015.161.348 = c(17L,     77L, 0L, 146L, 0L), NASQAN2015.162.348 = c(0L, 38L, 0L, 95L,     0L), NASQAN2015.163.348 = c(0L, 39L, 0L, 7L, 0L)), row.names = c("ee866b92e722c35819b112aadc4ac885", "afc0eeec83a181be740331928d883362", "294c12d6881a2ed67aa1557cda9889ff", "466c2c4cb06ba39543c40a74c027008a", "fd0b270adb11f2781450c2e057e50f07"), class = "data.frame")> dput(ex.tax)structure(list(Kingdom = c("d__Bacteria", "d__Bacteria", "d__Bacteria", "d__Bacteria", "d__Bacteria"), Phylum = c("p__Chloroflexi", "p__Actinobacteriota", "p__Actinobacteriota", "p__Planctomycetota", "p__Cyanobacteria"), Class = c("c__Anaerolineae", "c__Actinobacteria", "c__Acidimicrobiia", "c__Planctomycetes", "c__Cyanobacteriia"), Order = c("o__Anaerolineales", "o__Frankiales", "o__Microtrichales", "o__Planctomycetales", "o__Chloroplast"), Family = c("f__Anaerolineaceae", "f__Sporichthyaceae", "f__Ilumatobacteraceae", "f__Rubinisphaeraceae", "f__Chloroplast"), Genus = c("g__uncultured", "g__Candidatus_Planktophila", "g__CL500-29_marine_group", "g__uncultured", "g__Chloroplast"), Species = c("s__unclassified_g__uncultured", "s__unclassified_g__Candidatus_Planktophila", "s__bacterium_enrichment", "s__unclassified_g__uncultured", "s__Guillardia_theta")), row.names = c("294c12d6881a2ed67aa1557cda9889ff", "466c2c4cb06ba39543c40a74c027008a", "afc0eeec83a181be740331928d883362", "ee866b92e722c35819b112aadc4ac885", "fd0b270adb11f2781450c2e057e50f07"), class = "data.frame")> dput(ex.tree)structure(list(Nnode = 4, tip.label = c("afc0eeec83a181be740331928d883362", "466c2c4cb06ba39543c40a74c027008a", "fd0b270adb11f2781450c2e057e50f07", "294c12d6881a2ed67aa1557cda9889ff", "ee866b92e722c35819b112aadc4ac885"), node.label = c("0.954", "0.678", "0.813", "0.942"), edge = structure(c(6L, 6L, 7L, 7L, 8L, 8L, 9L, 9L, 5L, 7L, 8L, 9L, 4L, 3L, 2L, 1L), dim = c(8L, 2L)), edge.length = c(0.328657635, 0.016960962, 0.053311576, 0.123171583, 0.177567591, 0.273360134, 0.177939166, 0.119027034), root = 6, root.edge = 0.020729803), class = "phylo")